Filtered trimed paired end transcriptome reads A.Ventralis_335 - SRA

SRX4935226: Filtered trimed paired end transcriptome reads A.Ventralis_335
1 ILLUMINA (Illumina HiSeq 2500) run: 47.3M spots, 9.3G bases, 3.6Gb downloads

Design: Two PE libraries with paired-end 100 bp reads separated by a ~200 bp gap between the reads, TruSeq RNA Library Prep Kit v2, Illumina

Submitted by: Oakland University

Study: Genomes, annotations and transcriptome of 3 Caribbean Parrots

PRJNA496322 • SRP166808 • All experiments • All runs

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Genome wide data is used to assemble and annotate the genomes of three Amazon species from the Caribbean: Cuban amazon (Amazona leucocephala), Hispeniolan amazon (A. ventralis) and Puerto Rican parrot (A. vittata).Previously assembled A. vittata is improved on and used it as a reference genome to assemble the closely related species. Genes are annotated, interrogated for the signatures of historic selections, and species phylogeny is evaluated using the new data, and in the context of bird genome evolution.

Sample: Parrot335

SAMN10239473 • SRS3979612 • All experiments • All runs

Organism: Amazona ventralis

Library:

Name: A. ventralis_transcriptome_bld_335

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: unspecified

Layout: PAIRED

Runs: 1 run, 47.3M spots, 9.3G bases, 3.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR8108618	47,283,136	9.3G	3.6Gb	2018-12-01

ID:: 6636586

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